PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057839001
Common NameGSBRNA2T00057839001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 477aa    MW: 50248.9 Da    PI: 9.0102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057839001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-055981123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  GSBRNA2T00057839001 59 FVCEICKKGFQRDQNLQLHRRGH 81
                         89*******************88 PP

2zf-C2H213.30.00025135157123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC +C+k +  +s+ k H + +
  GSBRNA2T00057839001 135 YKCDKCSKKYAVQSDWKAHSKIC 157
                          9******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.64E-75881No hitNo description
Gene3DG3DSA:3.30.160.609.4E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0395981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6375981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035581100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-7130155No hitNo description
SMARTSM0035580135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MPVDLDNSST VSGDARSVSS TGNQNHKPPK KKRNLPGMPD PGAEVIALSP KTLMATNRFV  60
CEICKKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVRKKVY VCPVSGCVHH DPSRALGDLT  120
GIKKHFCRKH GEKKYKCDKC SKKYAVQSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR  180
AFCDVLAEET ANNHTHTNQL CPQTSVVLEP DLKSPASAAP LTPPPTSNEP AKISSPSVLP  240
VESSSESPEN NPLEVIMDEE PPRTIGFNVS DDHSRTPRTT ASPSLYASST PPSTSLFAPS  300
SSMEPISLCL STNPSLFGRP TMAQDPPPHF LTPLSLPPPQ PAMSATALLQ KAAQMGSTGS  360
GGSLLRGLGV VSSASSSSME LSSHDLGLGL LPCSSSGGSG GGSGGLKELM LGNSCVFGPK  420
QTTLDFLGLG RAVGNGSSNP VGGLSALLTS IGGGGGMNVF GTAGEFSGKD IGRRSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18597KLRQRSSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71950.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621021.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A078JJR80.0A0A078JJR8_BRANA; BnaCnng53120D protein
STRINGfgenesh2_kg.8__2743__AT5G66730.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-162C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]